1DUA Toxin, Hydrolase date Jan 17, 2000
title Crystal Structure Of Exfoliative Toxin A
authors A.C.Papageorgiou, L.R.W.Plano, C.M.Collins, K.R.Acharya
compound source
Molecule: Exfoliative Toxin A
Chain: A
Ec: 3.4.21.-
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet15b
Other_details: Chromosomal Dna Of S. Aureus Isolated From A With Staphylococcal Scalded Skin Disease
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.138 67.228 47.999 90.00 118.09 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Hydrolase E.C.3.4.21 BRENDA
related structures by homologous chain: 1AGJ, 1DUE
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceStructural similarities and differences in Staphylococcus aureus exfoliative toxins A and B as revealed by their crystal structures., Papageorgiou AC, Plano LR, Collins CM, Acharya KR, Protein Sci 2000 Mar;9(3):610-8. PMID:10752623
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1dua.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 1DUA
  • Likely Quarternary Molecular Structure file(s) for 1DUA
  • Retrieve 1DUA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DUA from S2C, [Save to disk]
    • View 1DUA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DUA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DUA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1duaa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dua] [1dua_A]
  • SWISS-PROT database: [P09331]
  • Domain organization of [ETA_STAAU] by SWISSPFAM
  • Domain found in 1DUA: [Tryp_SPc ] by SMART
    • Other resources with information on 1DUA
  • Community annotation for 1DUA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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