1DV2 The structure of biotin carboxylase, mutant E288K, complexed with ATP date
authors Thoden, J.B., Blanchard, C.Z., Holden, H.M., Waldrop, G.L.
compound source
symmetry
R_factor
R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand ATP enzyme
related structures by homologous chain: 1BNC
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • biotin carboxylase activity


    • Primary referenceMovement of the biotin carboxylase B-domain as a result of ATP binding., Thoden JB, Blanchard CZ, Holden HM, Waldrop GL, J Biol Chem 2000 May 26;275(21):16183-90. PMID:10821865
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (1dv2.pdb1.gz) 72 Kb
  • Biological Unit Coordinates (1dv2.pdb2.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 1DV2
  • CSU: Contacts of Structural Units for 1DV2
  • Likely Quarternary Molecular Structure file(s) for 1DV2
  • Retrieve 1DV2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DV2 from S2C, [Save to disk]
    • View 1DV2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DV2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DV2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dv2a3, region A:115-330 [Jmol] [rasmolscript] [script source]
        - Domain d1dv2a2, region A:1C-114 [Jmol] [rasmolscript] [script source]
        - Domain d1dv2a1, region A:331-447 [Jmol] [rasmolscript] [script source]
        - Domain d1dv2b3, region B:115-330 [Jmol] [rasmolscript] [script source]
        - Domain d1dv2b2, region B:1A-114 [Jmol] [rasmolscript] [script source]
        - Domain d1dv2b1, region B:331-447 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dv2_B] [1dv2_A] [1dv2]
  • SWISS-PROT database: [P24182]
  • Domain organization of [ACCC_ECOLI] by SWISSPFAM
  • Domain found in 1DV2: [Biotin_carb_C ] by SMART
    • Other resources with information on 1DV2
  • Community annotation for 1DV2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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