1DZZ	Lyase (Aldehyde)	date	Mar 07, 2000
title	L-Fuculose-1-Phosphate Aldolase From Escherichia Coli Mutant
authors	A.C.Joerger, G.E.Schulz
compound		source
Molecule: L-Fuculose Phosphate Aldolase Chain: P Synonym: D-Ribulose-Phosphate Aldolase,L-Fuculose-1-Phospha Aldolase; Ec: 4.1.2.17 Engineered: Yes Mutation: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Gene: Fuca, Fuca_1, Fuca_2, A9r57_06860, Acu57_24310, Am464 Auq13_17640, Banra_01321, Banra_04164, Banra_04304, Bhs87_1 Bjj90_05160, Bue81_06870, Bvcms12bk_05168, Bvcms2454_02072, Bvcmshhp001_01136, Bvcmshhp056_02000, Bvcmskkp061_04411, Bvcmsksp011_02414, Bvcmsksp024_03378, Bvcmsksp026_00082, Bvcmsksp040_03336, Bvcmsksp045_02228, Bvcmsksp067_03660, Bvcmsnsnp027_02922, Bvcmsnsp047_01577, Bvcmssinp012_00041, Bw690_04870, C4j69_11555, C9e25_03225, Cv83915_03318, D2185 D3821_11040, D3y67_10455, D9d20_04550, D9e35_20280, D9h68_1 Dp258_16175, E5m00_06120, Eai52_12600, Ec3234a_48c01090, Ecto6_01047, Eep23_13950, Efb45_09210, El75_0893, El79_0895 El80_0898, Eps71_16910, Ept01_16955, Ers085365_02448, Ers085366_03061, Ers085416_02919, Ers139211_02051, Ers15087 Exx32_11695, Exx39_16005, Exx71_16135, Hmcms184_04796, Nctc11181_03256, Nctc13462_04786, Nctc8500_01060, Nctc9037_ Nctc9045_01197, Nctc9058_00868, Nctc9062_02153, Nctc9706_03 Rk56_023265, Samea3472047_00318, Samea3472080_03134, Samea3484427_03277, Samea3484429_03394, Samea3752559_02974, Samea3753300_01128, Sk85_03044, Wr15_06195; Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm 105 Expression_system_plasmid: Pkkfa2-Y113f Other_details: Y113f Substitution Performed With Phosphorot Method Using M13mp19
symmetry	Space Group: P 4 21 2	R_factor 0.159 R_Free 0.207
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.700 93.700 42.600 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.92 Å
ligand	BME, SO4, ZN	enzyme	Lyase E.C.4.1.2.17 BRENDA
related structures	by homologous chain: 1DZV, 1FUA
Gene Ontology	Chain Function Process Component P
Primary reference	Catalytic action of fuculose 1-phosphate aldolase (class II) as derived from structure-directed mutagenesis., Joerger AC, Gosse C, Fessner WD, Schulz GE, Biochemistry 2000 May 23;39(20):6033-41. PMID:10821675

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk] Biological Unit Coordinates (1dzz.pdb1.gz) 138 Kb LPC: Ligand-Protein Contacts for 1DZZ CSU: Contacts of Structural Units for 1DZZ Likely Quarternary Molecular Structure file(s) for 1DZZ Structure Factors (93 Kb) Retrieve 1DZZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DZZ from S2C, [Save to disk] Re-refined 1dzz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1DZZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DZZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DZZ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dzzp_, region P [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dzz_P] [1dzz] SWISS-PROT database: [P0AB87] Domain organization of [FUCA_ECOLI] by SWISSPFAM Domain found in 1DZZ: [Aldolase_II ] by SMART

Other resources with information on 1DZZ

Community annotation for 1DZZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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