1E05	Blood Clotting	date	Mar 09, 2000
title	Plasma Alpha Antithrombin-III
authors	A.J.Mccoy, R.Skinner, J.P.Abrahams, X.Y.Pei, R.W.Carrell
compound		source
Molecule: Antithrombin-III Chain: I, L Synonym: Atiii, Serpin C1		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Other_details: Plasma Alpha Antithrombin-III
symmetry	Space Group: P 1 21 1	R_factor 0.196 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.410 98.310 90.410 90.00 103.32 90.00
method	X-Ray Diffraction	resolution	2.62 Å
ligand	BMA, GAL, GOL, GUP, MAN, NAG, PO4	enzyme
related structures	by homologous chain: 1OYH, 2ANT
Gene Ontology	Chain Function Process Component I, L
Primary reference	Structure of beta-antithrombin and the effect of glycosylation on antithrombin's heparin affinity and activity., McCoy AJ, Pei XY, Skinner R, Abrahams JP, Carrell RW, J Mol Biol. 2003 Feb 21;326(3):823-33. PMID:12581643

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk] Biological Unit Coordinates (1e05.pdb1.gz) 71 Kb Biological Unit Coordinates (1e05.pdb2.gz) 70 Kb LPC: Ligand-Protein Contacts for 1E05 CSU: Contacts of Structural Units for 1E05 Likely Quarternary Molecular Structure file(s) for 1E05 Retrieve 1E05 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1E05 from S2C, [Save to disk]

View 1E05 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1E05

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1E05, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1e05i_, region I [Jmol] [rasmolscript] [script source]     - Domain d1e05l_, region L [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1e05] [1e05_I] [1e05_L] SWISS-PROT database: [P01008] Domain organization of [ANT3_HUMAN] by SWISSPFAM Domain found in 1E05: [SERPIN ] by SMART

Other resources with information on 1E05

Community annotation for 1E05 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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