1E0T Phosphotransferase date Apr 10, 2000
title R292d Mutant Of E. Coli Pyruvate Kinase
authors R.Fortin, A.Mattevi
compound source
Molecule: Pyruvate Kinase
Chain: A, B, C, D
Ec: 2.7.1.40
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Pykf, Ac789_1c18560, Acn002_1349, El75_1979, El79_201 El80_2048, Hmpref3040_05259;
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 21 21 21
R_factor 0.246 R_Free 0.315
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.470 129.340 240.370 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand SO4 enzyme Transferase E.C.2.7.1.40 BRENDA
related structures by homologous chain: 1PKY
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceThe allosteric regulation of pyruvate kinase., Valentini G, Chiarelli L, Fortin R, Speranza ML, Galizzi A, Mattevi A, J Biol Chem 2000 Jun 16;275(24):18145-52. PMID:10751408
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk]
  • Biological Unit Coordinates (1e0t.pdb1.gz) 266 Kb
  • LPC: Ligand-Protein Contacts for 1E0T
  • CSU: Contacts of Structural Units for 1E0T
  • Likely Quarternary Molecular Structure file(s) for 1E0T
  • Structure Factors (519 Kb)
  • Retrieve 1E0T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E0T from S2C, [Save to disk]
  • Re-refined 1e0t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1E0T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E0T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E0T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e0ta2, region A:1-69,A:168-344 [Jmol] [rasmolscript] [script source]
        - Domain d1e0ta3, region A:354-470 [Jmol] [rasmolscript] [script source]
        - Domain d1e0ta1, region A:70-167 [Jmol] [rasmolscript] [script source]
        - Domain d1e0tb2, region B:1-69,B:168-344 [Jmol] [rasmolscript] [script source]
        - Domain d1e0tb3, region B:354-470 [Jmol] [rasmolscript] [script source]
        - Domain d1e0tb1, region B:70-167 [Jmol] [rasmolscript] [script source]
        - Domain d1e0tc2, region C:1-69,C:168-344 [Jmol] [rasmolscript] [script source]
        - Domain d1e0tc3, region C:354-470 [Jmol] [rasmolscript] [script source]
        - Domain d1e0tc1, region C:70-167 [Jmol] [rasmolscript] [script source]
        - Domain d1e0td2, region D:1-69,D:168-344 [Jmol] [rasmolscript] [script source]
        - Domain d1e0td3, region D:354-470 [Jmol] [rasmolscript] [script source]
        - Domain d1e0td1, region D:70-167 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e0t_C] [1e0t_D] [1e0t] [1e0t_B] [1e0t_A]
  • SWISS-PROT database: [P0AD61]
  • Domain organization of [KPYK1_ECOLI] by SWISSPFAM
  • Other resources with information on 1E0T
  • Community annotation for 1E0T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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