1E3S Oxidoreductase date Jun 22, 2000
title Rat Brain 3-Hydroxyacyl-Coa Dehydrogenase Binary Complex Wit
authors A.J.Powell, J.A.Read, M.J.Banfield, R.L.Brady
compound source
Molecule: Short Chain 3-Hydroxyacyl-Coa Dehydrogenase
Chain: A, B, C, D
Synonym: Hadh II
Ec: 1.1.1.35
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Organ: Brain
Organelle: Mitochonria
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_cellular_location: Cytoplasm
Expression_system_plasmid: Pet15b
symmetry Space Group: P 1
R_factor 0.189 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.280 68.960 69.550 64.84 72.51 74.98
method X-Ray Diffractionresolution 2.00 Å
ligand NAD enzyme Oxidoreductase E.C.1.1.1.35 BRENDA
related structures by homologous chain: 1E3W, 1U7T
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceRecognition of structurally diverse substrates by type II 3-hydroxyacyl-CoA dehydrogenase (HADH II)/amyloid-beta binding alcohol dehydrogenase (ABAD)., Powell AJ, Read JA, Banfield MJ, Gunn-Moore F, Yan SD, Lustbader J, Stern AR, Stern DM, Brady RL, J Mol Biol 2000 Oct 20;303(2):311-27. PMID:11023795
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]
  • Biological Unit Coordinates (1e3s.pdb1.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 1E3S
  • CSU: Contacts of Structural Units for 1E3S
  • Likely Quarternary Molecular Structure file(s) for 1E3S
  • Retrieve 1E3S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E3S from S2C, [Save to disk]
  • View 1E3S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E3S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E3S, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e3sa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1e3sb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1e3sc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1e3sd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e3s_D] [1e3s_B] [1e3s_C] [1e3s_A] [1e3s]
  • SWISS-PROT database: [O70351]
  • Domain organization of [HCD2_RAT] by SWISSPFAM
  • Other resources with information on 1E3S
  • Community annotation for 1E3S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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