1E4A Aldolase (Class Ii) date Jun 30, 2000
title L-Fuculose 1-Phosphate Aldolase From Escherichia Coli Mutant
authors A.C.Joerger, G.E.Schulz
compound source
Molecule: L-Fuculose 1-Phosphate Aldolase
Chain: P
Ec: 4.1.2.17
Engineered: Yes
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm 105
Expression_system_plasmid: Pkkfa2-Del(27)
Other_details: Ala27 Deletion Performed With Phosphorothioa Using M13mp19
symmetry Space Group: P 4 21 2
R_factor 0.156 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.250 93.250 43.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.15 Å
ligand BME, SO4, ZN enzyme Lyase E.C.4.1.2.17 BRENDA
related structures by homologous chain: 1DZW, 1E47
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referenceStructures of l-fuculose-1-phosphate aldolase mutants outlining motions during catalysis., Joerger AC, Mueller-Dieckmann C, Schulz GE, J Mol Biol 2000 Nov 3;303(4):531-43. PMID:11054289
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1e4a.pdb1.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 1E4A
  • CSU: Contacts of Structural Units for 1E4A
  • Likely Quarternary Molecular Structure file(s) for 1E4A
  • Structure Factors (75 Kb)
  • Retrieve 1E4A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E4A from S2C, [Save to disk]
  • Re-refined 1e4a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1E4A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E4A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E4A, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e4ap_, region P [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e4a] [1e4a_P]
  • SWISS-PROT database: [P0AB87]
  • Domain organization of [FUCA_ECOLI] by SWISSPFAM
  • Domain found in 1E4A: [Aldolase_II ] by SMART
  • Other resources with information on 1E4A
  • Community annotation for 1E4A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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