1E4I Hydrolase date Jul 06, 2000
title 2-Deoxy-2-Fluoro-Beta-D-Glucosylenzyme Intermediate Complex Beta-Glucosidase From Bacillus Polymyxa
authors J.Sanz-Aparicio, B.Gonzalez, J.A.Hermoso, J.C.Arribas, F.J.Canad J.Polaina
compound source
Molecule: Beta-Glucosidase
Chain: A
Ec: 3.2.1.21
Engineered: Yes
Mutation: Yes
Organism_scientific: Bacillus Polymyxa
Organism_taxid: 1406
Atcc: 842
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109(De3)
symmetry Space Group: I 4 2 2
R_factor 0.210 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
136.230 136.230 173.260 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand G2F, NFG enzyme Hydrolase E.C.3.2.1.21 BRENDA
related structures by homologous chain: 1UYQ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of increased resistance to thermal denaturation induced by single amino acid substitution in the sequence of beta-glucosidase A from Bacillus polymyxa., Sanz-Aparicio J, Hermoso JA, Martinez-Ripoll M, Gonzalez B, Lopez-Camacho C, Polaina J, Proteins. 1998 Dec 1;33(4):567-76. PMID:9849940
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (1e4i.pdb1.gz) 608 Kb
  • LPC: Ligand-Protein Contacts for 1E4I
  • CSU: Contacts of Structural Units for 1E4I
  • Likely Quarternary Molecular Structure file(s) for 1E4I
  • Retrieve 1E4I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E4I from S2C, [Save to disk]
  • View 1E4I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E4I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E4I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e4ia_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e4i_A] [1e4i]
  • SWISS-PROT database: [P22073]
  • Domain organization of [BGLA_PAEPO] by SWISSPFAM
  • Other resources with information on 1E4I
  • Community annotation for 1E4I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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