1E4N Hydrolase date Jul 11, 2000
title Crystal Structure Of The Inactive Mutant Monocot (Maize Zmgl Glucosidase Zmglue191d In Complex With The Natural Aglycone
authors M.Czjzek, M.Cicek, D.R.Bevan, V.Zamboni, B.Henrissat, A.Esen
compound source
Molecule: Beta-Glucosidase
Chain: A, B
Ec: 3.2.1.21
Engineered: Yes
Mutation: Yes
Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577
Strain: Cv. Mutin
Tissue: Coleoptile
Organelle: Chloroplast
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: Plys S
Expression_system_plasmid: Pet-21a
Expression_system_gene: Glu1
symmetry Space Group: P 21 21 21
R_factor 0.223 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.570 95.310 117.760 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand HBO enzyme Hydrolase E.C.3.2.1.21 BRENDA
related structures by homologous chain: 1E56, 1HXJ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceExpression of soluble and catalytically active plant (monocot) beta-glucosidases in E. coli., Cicek M, Esen A, Biotechnol Bioeng. 1999 May 20;63(4):392-400. PMID:10099619
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (1e4n.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 1E4N
  • CSU: Contacts of Structural Units for 1E4N
  • Likely Quarternary Molecular Structure file(s) for 1E4N
  • Structure Factors (447 Kb)
  • Retrieve 1E4N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E4N from S2C, [Save to disk]
  • Re-refined 1e4n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1E4N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E4N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E4N, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e4na_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1e4nb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e4n] [1e4n_A] [1e4n_B]
  • SWISS-PROT database: [P49235]
  • Domain organization of [BGLC_MAIZE] by SWISSPFAM
  • Other resources with information on 1E4N
  • Community annotation for 1E4N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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