1E4R Defensin date Jul 12, 2000
title Solution Structure Of The Mouse Defensin Mbd-8
authors F.Bauer, K.Schweimer, E.Kluver, K.Adermann, W.G.Forssmann, P.Roes H.Sticht
compound source
Molecule: Beta-Defensin 8
Chain: A
Synonym: Mbd-8,Defensin,Beta 8,Defensin-Related Peptide,Def
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
methodSolution NMR
related structures by homologous chain: 1E4T
Gene
Ontology
ChainFunctionProcessComponent
A
  • chemoattractant activity


    • Primary referenceStructure determination of human and murine beta-defensins reveals structural conservation in the absence of significant sequence similarity., Bauer F, Schweimer K, Kluver E, Conejo-Garcia JR, Forssmann WG, Rosch P, Adermann K, Sticht H, Protein Sci 2001 Dec;10(12):2470-9. PMID:11714914
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (1e4r.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 1E4R
  • Retrieve 1E4R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E4R from S2C, [Save to disk]
    • View 1E4R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1E4R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E4R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e4ra_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e4r_A] [1e4r]
  • SWISS-PROT database: [Q91V82]
  • Domain organization of [DEFB8_MOUSE] by SWISSPFAM
  • Domain found in 1E4R: [DEFSN ] by SMART
    • Other resources with information on 1E4R
  • Community annotation for 1E4R at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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