1E61 OXIDIZED DMSO REDUCTASE EXPOSED TO HEPES - Structure II BUFFER date
authors Bailey, S., Bennett, B., Adams, B., Smith, A.T., Bray, R.C.
compound source
symmetry
R_factor
R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand 2MO, PGD, SO4 enzyme
related structures by homologous chain: 1E18, 4DMR
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceReversible dissociation of thiolate ligands from molybdenum in an enzyme of the dimethyl sulfoxide reductase family., Bray RC, Adams B, Smith AT, Bennett B, Bailey S, Biochemistry 2000 Sep 19;39(37):11258-69. PMID:10985771
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (258 Kb) [Save to disk]
  • Biological Unit Coordinates (1e61.pdb1.gz) 128 Kb
  • Biological Unit Coordinates (1e61.pdb2.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 1E61
  • CSU: Contacts of Structural Units for 1E61
  • Likely Quarternary Molecular Structure file(s) for 1E61
  • Retrieve 1E61 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E61 from S2C, [Save to disk]
  • View 1E61 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E61
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E61, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e61a2, region A:4-625 [Jmol] [rasmolscript] [script source]
        - Domain d1e61a1, region A:626-781 [Jmol] [rasmolscript] [script source]
        - Domain d1e61c2, region C:3-625 [Jmol] [rasmolscript] [script source]
        - Domain d1e61c1, region C:626-781 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e61_C] [1e61_A] [1e61]
  • SWISS-PROT database: [Q52675]
  • Domain organization of [DMSA_RHOCA] by SWISSPFAM
  • Other resources with information on 1E61
  • Community annotation for 1E61 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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