1E6O	Immunoglobulin	date	Aug 21, 2000
title	Crystal Structure Of Fab13b5 Against Hiv-1 Capsid Protein P2
authors	S.Monaco-Malbet, C.Berthet-Colominas, A.Novelli, N.Battai, N.Pig F.Mallet, S.Cusack
compound		source
Molecule: Immunoglobulin Heavy Chain Chain: H Fragment: Heavy Chain 1-219 Other_details: Obtained By Pepsin Cleavage (Fab')		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
Molecule: Immunoglobulin Light Chain Chain: L Fragment: Light Chain 1-210 Other_details: Obtained By Pepsin Cleavage (Fab')		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
symmetry	Space Group: P 21 21 21	R_factor 0.225 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 36.680 81.900 134.400 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
related structures	by homologous chain: 1HYY, 1NGX, 1OAU, 1PZ5
Primary reference	Mutual conformational adaptations in antigen and antibody upon complex formation between an Fab and HIV-1 capsid protein p24., Monaco-Malbet S, Berthet-Colominas C, Novelli A, Battai N, Piga N, Cheynet V, Mallet F, Cusack S, Structure Fold Des 2000 Oct 15;8(10):1069-77. PMID:11080628

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (1e6o.pdb1.gz) 70 Kb CSU: Contacts of Structural Units for 1E6O Likely Quarternary Molecular Structure file(s) for 1E6O Structure Factors (264 Kb) Retrieve 1E6O in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1E6O from S2C, [Save to disk] Re-refined 1e6o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1E6O in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1E6O

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1E6O, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1e6oh1, region H:1-120 [Jmol] [rasmolscript] [script source]     - Domain d1e6oh2, region H:121-219 [Jmol] [rasmolscript] [script source]     - Domain d1e6ol1, region L:1-105 [Jmol] [rasmolscript] [script source]     - Domain d1e6ol2, region L:106-210 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1e6o_H] [1e6o] [1e6o_L] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 1E6O: [IG_like] [IGv ] by SMART

Other resources with information on 1E6O

Community annotation for 1E6O at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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