1E87 Sugar Binding Protein date Sep 18, 2000
title Human Cd69 - Trigonal Form
authors J.Tormo
compound source
Molecule: Early Activation Antigen Cd69
Chain: A
Fragment: C-Type Lectin-Like Domain, Residues 82-199
Synonym: Activation Inducer Molecule, Aim, Bl-Acp26, C-Typ Domain Family 2 Member C, Ea1, Early T-Cell Activation Anti Gp3228, Leukocyte Surface Antigen Leu-23, Mlr-3, Cd69, Leu
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Hematopoietic Cell
Cellular_location: Cell Surface
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_cellular_location: Inclusion Bodies
Expression_system_vector: Pet26
symmetry Space Group: P 31 2 1
R_factor 0.229 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.424 48.424 119.886 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand GOL, ZN enzyme
related structures by homologous chain: 1E8I
Primary referenceCrystal structure of the C-type lectin-like domain from the human hematopoietic cell receptor CD69., Llera AS, Viedma F, Sanchez-Madrid F, Tormo J, J Biol Chem 2001 Mar 9;276(10):7312-9. PMID:11036086
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (1e87.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 1E87
  • CSU: Contacts of Structural Units for 1E87
  • Likely Quarternary Molecular Structure file(s) for 1E87
  • Retrieve 1E87 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E87 from S2C, [Save to disk]
  • View 1E87 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E87
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1E87 from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E87, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e87a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e87] [1e87_A]
  • SWISS-PROT database: [Q07108]
  • Domain organization of [CD69_HUMAN] by SWISSPFAM
  • Domain found in 1E87: [CLECT ] by SMART
  • Other resources with information on 1E87
  • Community annotation for 1E87 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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