1E8A Antifungal Protein date Sep 18, 2000
title The Three-Dimensional Structure Of Human S100a12
authors O.V.Moroz, A.A.Antson, G.N.Murshudov, N.J.Maitland, G.G.Dodson, K.S.Wilson, I.Skibshoj, E.M.Lukanidin, I.B.Bronstein
compound source
Molecule: S100a12
Chain: A, B
Synonym: Calgranulin C
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Blood
Cell: Granulocyte
symmetry Space Group: H 3
R_factor 0.180 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.600 99.600 64.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.95 Å
ligand CA enzyme
related structures by homologous chain: 1ODB
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe three-dimensional structure of human S100A12., Moroz OV, Antson AA, Murshudov GN, Maitland NJ, Dodson GG, Wilson KS, Skibshoj I, Lukanidin EM, Bronstein IB, Acta Crystallogr D Biol Crystallogr 2001 Jan;57(Pt 1):20-9. PMID:11134923
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (1e8a.pdb1.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 1E8A
  • CSU: Contacts of Structural Units for 1E8A
  • Likely Quarternary Molecular Structure file(s) for 1E8A
  • Structure Factors (139 Kb)
  • Retrieve 1E8A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E8A from S2C, [Save to disk]
  • Re-refined 1e8a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1E8A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E8A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E8A, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e8aa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1e8ab_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e8a] [1e8a_B] [1e8a_A]
  • SWISS-PROT database: [P80511]
  • Domain organization of [S10AC_HUMAN] by SWISSPFAM
  • Domain found in 1E8A: [S_100 ] by SMART
  • Other resources with information on 1E8A
  • Community annotation for 1E8A at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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