1E8R Hydrolase date Sep 28, 2000
title Solution Structure Of Type X Cbd
authors S.Raghothama, P.J.Simpson, H.J.Gilbert, M.P.Williamson
compound source
Molecule: Endo-1,4-Beta-Xylanase
Chain: A
Fragment: Type X Cellulose Binding Domain (Cbdx)
Ec: 3.2.1.8
Engineered: Yes
Organism_scientific: Pseudomonas Fluorescens
Organism_taxid: 294
Plasmid: Bl21
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bl21
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.2.1.8 BRENDA
note 1E8R is a representative structure and supersedes 1CT7
related structures by homologous chain: 1QLD
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the CBM10 cellulose binding module from Pseudomonas xylanase A., Raghothama S, Simpson PJ, Szabo L, Nagy T, Gilbert HJ, Williamson MP, Biochemistry 2000 Feb 8;39(5):978-84. PMID:10653641
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1E8R
  • Original NMR restraints for 1E8R from PDB
  • Retrieve 1E8R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E8R from S2C, [Save to disk]
  • View 1E8R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E8R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E8R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e8ra_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e8r] [1e8r_A]
  • SWISS-PROT database: [P14768]
  • Domain organization of [XYNA_PSEFL] by SWISSPFAM
  • Domain found in 1E8R: [CBM_10 ] by SMART
  • Other resources with information on 1E8R
  • Community annotation for 1E8R at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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