1EDJ Immunoglobulin-Binding Protein date Oct 07, 1996
title Staphylococcal Protein A E-Domain (180), Nmr, 20 Structures
authors M.A.Starovasnik, N.J.Skelton, W.J.Fairbrother
compound source
Molecule: Staphylococcal Protein A
Chain: A
Fragment: E-Domain (180)
Engineered: Yes
Other_details: Phe 11 Chi 1 Rotomer Is 180 Degrees
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
related structures by homologous chain: 1EDI, 1EDK
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the E-domain of staphylococcal protein A., Starovasnik MA, Skelton NJ, O'Connell MP, Kelley RF, Reilly D, Fairbrother WJ, Biochemistry 1996 Dec 3;35(48):15558-69. PMID:8952510
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (284 Kb) [Save to disk]
  • Biological Unit Coordinates (1edj.pdb1.gz) 14 Kb
  • CSU: Contacts of Structural Units for 1EDJ
  • Retrieve 1EDJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EDJ from S2C, [Save to disk]
  • View 1EDJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EDJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EDJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1edj__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1edj] [1edj_A]
  • SWISS-PROT database: [P38507]
  • Domain organization of [SPA_STAAU] by SWISSPFAM
  • Other resources with information on 1EDJ
  • Community annotation for 1EDJ at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1EDJ from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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