1EE8 Dna Binding Protein date Jan 31, 2000
title Crystal Structure Of Mutm (Fpg) Protein From Thermus Thermop
authors M.Sugahara, T.Mikawa, T.Kumasaka, M.Yamamoto, R.Kato, K.Fukuyama, S.Kuramitsu, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Mutm (Fpg) Protein
Chain: A, B
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet3a
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.421 61.289 98.342 90.00 91.71 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a repair enzyme of oxidatively damaged DNA, MutM (Fpg), from an extreme thermophile, Thermus thermophilus HB8., Sugahara M, Mikawa T, Kumasaka T, Yamamoto M, Kato R, Fukuyama K, Inoue Y, Kuramitsu S, EMBO J 2000 Aug 1;19(15):3857-69. PMID:10921868
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (1ee8.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 1EE8
  • CSU: Contacts of Structural Units for 1EE8
  • Likely Quarternary Molecular Structure file(s) for 1EE8
  • Retrieve 1EE8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EE8 from S2C, [Save to disk]
  • View 1EE8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EE8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EE8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ee8a2, region A:1-121 [Jmol] [rasmolscript] [script source]
        - Domain d1ee8a1, region A:122-210 [Jmol] [rasmolscript] [script source]
        - Domain d1ee8a3, region A:211-266 [Jmol] [rasmolscript] [script source]
        - Domain d1ee8b2, region B:1-121 [Jmol] [rasmolscript] [script source]
        - Domain d1ee8b1, region B:122-210 [Jmol] [rasmolscript] [script source]
        - Domain d1ee8b3, region B:211-266 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ee8_A] [1ee8_B] [1ee8]
  • SWISS-PROT database: [O50606]
  • Domain organization of [FPG_THET8] by SWISSPFAM
  • Domains found in 1EE8: [Fapy_DNA_glyco] [H2TH ] by SMART
  • Other resources with information on 1EE8
  • Community annotation for 1EE8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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