OCA Atlas for 1EF4

1EF4

Transferase

date

Feb 07, 2000

title

Solution Structure Of The Essential Rna Polymerase Subunit R Methanobacterium Thermoautotrophicum

authors

C.D.Mackereth, C.H.Arrowsmith, A.M.Edwards, L.P.Mcintosh, Northe Structural Genomics Consortium (Nesg)

compound

source

Molecule: Dna-Directed Rna Polymerase
Chain: A
Fragment: Subunit Rpb10
Synonym: Subunit N
Ec: 2.7.7.6
Engineered: Yes

Organism_scientific: Methanothermobacter Thermautotrophicus
Organism_taxid: 145262
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b

method

Solution NMR

ligand

enzyme

Transferase E.C.2.7.7.6 BRENDA

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum., Mackereth CD, Arrowsmith CH, Edwards AM, McIntosh LP, Proc Natl Acad Sci U S A 2000 Jun 6;97(12):6316-21. PMID:10841539

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (298 Kb) [Save to disk]

Biological Unit Coordinates (1ef4.pdb1.gz) 15 Kb

LPC: Ligand-Protein Contacts for 1EF4

CSU: Contacts of Structural Units for 1EF4

Original NMR restraints for 1EF4 from PDB

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1EF4 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1EF4 from S2C, [Save to disk]

View 1EF4 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1EF4

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1EF4, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1ef4a_, region A [Jmol] [rasmolscript] [script source]

Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH

Summaries and structural analyses of PDB data files from PDBSum

Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ef4_A] [1ef4]

SWISS-PROT database: [O26147]

Domain organization of [RPON_METTH] by SWISSPFAM

Other resources with information on 1EF4

Community annotation for 1EF4 at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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