1EFO CRYSTAL STRUCTURE OF AN ADENINE BULGE IN THE RNA CHAIN OF A DNA/RNA HYBRID, D(CTCCTCTTC)/R(GAAGAGAGAG) date
authors Sudarsanakumar, C., Xiong, Y., Sundaralingam, M.
compound source
symmetry
R_factor
R_Free 0.2220000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
Primary referenceCrystal structure of an adenine bulge in the RNA chain of a DNA.RNA hybrid, d(CTCCTCTTC).r(gaagagagag)., Sudarsanakumar C, Xiong Y, Sundaralingam M, J Mol Biol 2000 May 26;299(1):103-12. PMID:10860725
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (11 Kb) [Save to disk]
  • Biological Unit Coordinates (1efo.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 1EFO
  • Likely Quarternary Molecular Structure file(s) for 1EFO
  • Structure Factors (24 Kb)
  • Retrieve 1EFO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EFO from S2C, [Save to disk]
  • Re-refined 1efo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1EFO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EFO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EFO, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1efo_A] [1efo_B] [1efo]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1EFO
  • Community annotation for 1EFO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science