1EFR Hydrolase Antibiotic date May 24, 1996
title Bovine Mitochondrial F1-Atpase Complexed With The Peptide An Efrapeptin
authors J.P.Abrahams, S.K.Buchanan, M.J.Van Raaij, I.M.Fearnley, A.G.W.L J.E.Walker
compound source
Molecule: Bovine Mitochondrial F1-Atpase Subunit Alpha
Chain: A, B, C
Synonym: F1-Atpase
Ec: 3.6.1.34
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: Bovine Mitochondrial F1-Atpase Subunit Beta
Chain: D, E, F
Synonym: F1-Atpase
Ec: 3.6.1.34

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: Bovine Mitochondrial F1-Atpase Subunit Gamma
Chain: G
Synonym: F1-Atpase
Ec: 3.6.1.34

Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Heart
Tissue: Muscle
Organelle: Mitochondrion

Molecule: Efrapeptin C
Chain: Q
Engineered: Yes

Organism_scientific: Tolypocladium Inflatum
Organism_taxid: 29910
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free 0.220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
285.700 107.400 139.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand ACE, ADP, AIB, ANP, BAL, MG, TLX, YCP enzyme Hydrolase E.C.3.6.1.34 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


F, D, E


G


Primary referenceThe structure of bovine F1-ATPase complexed with the peptide antibiotic efrapeptin., Abrahams JP, Buchanan SK, Van Raaij MJ, Fearnley IM, Leslie AG, Walker JE, Proc Natl Acad Sci U S A 1996 Sep 3;93(18):9420-4. PMID:8790345
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (477 Kb) [Save to disk]
  • Biological Unit Coordinates (1efr.pdb1.gz) 467 Kb
  • LPC: Ligand-Protein Contacts for 1EFR
  • CSU: Contacts of Structural Units for 1EFR
  • Likely Quarternary Molecular Structure file(s) for 1EFR
  • Structure Factors (545 Kb)
  • Retrieve 1EFR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EFR from S2C, [Save to disk]
  • Re-refined 1efr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1EFR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EFR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EFR, from MSDmotif at EBI
  • Genome occurence of 1EFR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1efra2, region A:24-94 [Jmol] [rasmolscript] [script source]
        - Domain d1efra1, region A:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1efra3, region A:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1efrb2, region B:24-94 [Jmol] [rasmolscript] [script source]
        - Domain d1efrb1, region B:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1efrb3, region B:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1efrc2, region C:19-94 [Jmol] [rasmolscript] [script source]
        - Domain d1efrc1, region C:380-510 [Jmol] [rasmolscript] [script source]
        - Domain d1efrc3, region C:95-379 [Jmol] [rasmolscript] [script source]
        - Domain d1efrd1, region D:358-475 [Jmol] [rasmolscript] [script source]
        - Domain d1efrd3, region D:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1efrd2, region D:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1efre1, region E:358-474 [Jmol] [rasmolscript] [script source]
        - Domain d1efre3, region E:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1efre2, region E:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1efrf1, region F:358-474 [Jmol] [rasmolscript] [script source]
        - Domain d1efrf3, region F:82-357 [Jmol] [rasmolscript] [script source]
        - Domain d1efrf2, region F:9-81 [Jmol] [rasmolscript] [script source]
        - Domain d1efrg_, region G [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1efr_A] [1efr] [1efr_D] [1efr_C] [1efr_B] [1efr_Q] [1efr_E] [1efr_G] [1efr_F]
  • SWISS-PROT database: [P19483] [P00829] [P05631]
  • Domain organization of [ATPA_BOVIN] [ATPB_BOVIN] [ATPG_BOVIN] by SWISSPFAM
  • Domain found in 1EFR: [AAA ] by SMART
  • Other resources with information on 1EFR
  • Community annotation for 1EFR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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