1EMZ Viral Protein date Mar 20, 2000
title Solution Structure Of Fragment (350-370) Of The Transmembran Of Hepatitis C Envelope Glycoprotein E1
authors A.Op De Beeck, R.Montserret, S.Duvet, L.Cocquerel, R.Cacan, B.Bar M.Le Maire, F.Penin, J.Dubuisson
compound source
Molecule: Envelope Glycoprotein E1
Chain: A
Fragment: Transmembrane Domain (Residues 350-370)
Engineered: Yes
Synthetic: Yes
Other_details: This Peptide Was Chemically Synthesized. The Of This Peptide Is Naturally Found In Hepatitis C Virus.
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe transmembrane domains of hepatitis C virus envelope glycoproteins E1 and E2 play a major role in heterodimerization., Op De Beeck A, Montserret R, Duvet S, Cocquerel L, Cacan R, Barberot B, Le Maire M, Penin F, Dubuisson J, J Biol Chem 2000 Oct 6;275(40):31428-37. PMID:10807921
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (7 Kb) [Save to disk]
  • Biological Unit Coordinates (1emz.pdb1.gz) 5 Kb
  • CSU: Contacts of Structural Units for 1EMZ
  • Original NMR restraints for 1EMZ from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1EMZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EMZ from S2C, [Save to disk]
  • View 1EMZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EMZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EMZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1emza_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1emz_A] [1emz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1EMZ
  • Community annotation for 1EMZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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