OCA Atlas for 1EO8

1EO8

Viral Protein Immune System

date

Mar 22, 2000

title

Influenza Virus Hemagglutinin Complexed With A Neutralizing

authors

D.Fleury, B.Gigant, R.S.Daniels, J.J.Skehel, M.Knossow, T.Bizebar

compound

source

Molecule: Hemagglutinin (Ha1 Chain)
Chain: A
Fragment: Bromelain Released Fragment
Other_details: A Recombinant Influenza Strain Containing A (H3n2) Hemagglutinin;

Organism_scientific: Influenza A Virus (Ax-31(H3n2))
Organism_taxid: 132504
Strain: X31

Molecule: Hemagglutinin (Ha2 Chain)
Chain: B
Fragment: Bromelain Released Fragment
Other_details: A Recombinant Influenza Strain Containing A (H3n2) Hemagglutinin;

Organism_scientific: Influenza A Virus (Ax-31(H3n2))
Organism_taxid: 132504
Strain: X31

Molecule: Antibody (Light Chain)
Chain: L
Fragment: Fab Fragment Of Antibody Bh151

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbc
Cell: Hybridromas

Molecule: Antibody (Heavy Chain)
Chain: H
Fragment: Fab Fragment Of Antibody Bh151

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Balbc
Cell: Hybridromas

symmetry

Space Group: P 3 2 1

R_factor

0.196

R_Free

0.298

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
138.150	138.150	129.500	90.00	90.00	120.00

method

X-Ray Diffraction

resolution

2.80 Å

ligand

MAN, NAG

enzyme

related structures

by homologous chain: 1A5F, 1CLZ, 1HGH, 1QFU, 1RUY

Gene
Ontology

Chain	Function	Process	Component
A
B

Primary reference

Structural evidence for recognition of a single epitope by two distinct antibodies., Fleury D, Daniels RS, Skehel JJ, Knossow M, Bizebard T, Proteins 2000 Sep 1;40(4):572-8. PMID:10899782

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk]

Biological Unit Coordinates (1eo8.pdb1.gz) 436 Kb

LPC: Ligand-Protein Contacts for 1EO8

CSU: Contacts of Structural Units for 1EO8

Likely Quarternary Molecular Structure file(s) for 1EO8

Retrieve 1EO8 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1EO8 from S2C, [Save to disk]

View 1EO8 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1EO8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1EO8, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1eo8a_, region A [Jmol] [rasmolscript] [script source]
- Domain d1eo8b_, region B [Jmol] [rasmolscript] [script source]
- Domain d1eo8h1, region H:1-113 [Jmol] [rasmolscript] [script source]
- Domain d1eo8h2, region H:114-212 [Jmol] [rasmolscript] [script source]
- Domain d1eo8l1, region L:1-106B [Jmol] [rasmolscript] [script source]
- Domain d1eo8l2, region L:107-211 [Jmol] [rasmolscript] [script source]

Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH

Summaries and structural analyses of PDB data files from PDBSum

Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1eo8] [1eo8_B] [1eo8_L] [1eo8_A] [1eo8_H]

SWISS-PROT database: [P03437]

Domain organization of [HEMA_I68A0] by SWISSPFAM

Domains found in 1EO8: [IG_like] [IGv ] by SMART

Other resources with information on 1EO8

Community annotation for 1EO8 at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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