1EVZ Oxidoreductase date Apr 21, 2000
title Crystal Structure Of Leishmania Mexicana Glycerol-3-Phosphat Dehydrogenase In Complex With Nad
authors S.Suresh, S.Turley, F.R.Opperdoes, P.A.M.Michels, W.G.J.Hol
compound source
Molecule: Glycerol-3-Phosphate Dehydrogenase
Chain: A
Ec: 1.1.1.8
Engineered: Yes
Organism_scientific: Leishmania Mexicana
Organism_taxid: 5665
Cellular_location: Glycosome
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3
symmetry Space Group: P 41 21 2
R_factor 0.183 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.850 69.850 211.880 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MYS, NAD enzyme Oxidoreductase E.C.1.1.1.8 BRENDA
related structures by homologous chain: 1M67
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA potential target enzyme for trypanocidal drugs revealed by the crystal structure of NAD-dependent glycerol-3-phosphate dehydrogenase from Leishmania mexicana., Suresh S, Turley S, Opperdoes FR, Michels PA, Hol WG, Structure Fold Des 2000 May 15;8(5):541-52. PMID:10801498
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (1evz.pdb1.gz) 109 Kb
  • LPC: Ligand-Protein Contacts for 1EVZ
  • CSU: Contacts of Structural Units for 1EVZ
  • Likely Quarternary Molecular Structure file(s) for 1EVZ
  • Retrieve 1EVZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EVZ from S2C, [Save to disk]
  • View 1EVZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EVZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EVZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1evza1, region A:198-357 [Jmol] [rasmolscript] [script source]
        - Domain d1evza2, region A:9-197 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1evz] [1evz_A]
  • SWISS-PROT database: [P90551]
  • Domain organization of [GPDA_LEIME] by SWISSPFAM
  • Other resources with information on 1EVZ
  • Community annotation for 1EVZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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