1EXL STRUCTURE OF AN 11-MER DNA DUPLEX CONTAINING THE CARBOCYCLIC NUCLEOTIDE ANALOG: 2'-DEOXYARISTEROMYCIN date
authors Smirnov, S., Johnson, F., Marumoto, R., Santos, C.de.los.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 30 Modelsresolution
ligand 2AR enzyme
Primary referenceStructure of an 11-mer DNA duplex containing the carbocyclic nucleotide analog: 2'-deoxyaristeromycin., Smirnov S, Johnson F, Marumoto R, de los Santos C, J Biomol Struct Dyn 2000 Jun;17(6):981-91. PMID:10949165
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (357 Kb) [Save to disk]
  • Biological Unit Coordinates (1exl.pdb1.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 1EXL
  • CSU: Contacts of Structural Units for 1EXL
  • Original NMR restraints for 1EXL from PDB
  • Retrieve 1EXL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EXL from S2C, [Save to disk]
    • View 1EXL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1EXL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EXL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1exl] [1exl_A] [1exl_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1EXL
  • Community annotation for 1EXL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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