1F0L 1.55 ANGSTROM CRYSTAL STRUCTURE OF WILD TYPE DIPHTHERIA TOXIN date
authors Steere, B., Eisenberg, D.
compound source
symmetry
R_factor
R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.55
ligand APU, CL enzyme
note 1F0L is a representative structure
related structures by homologous chain: 1DDT
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • protein transmembrane transp...
  • toxin activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (208 Kb) [Save to disk]
  • Biological Unit Coordinates (1f0l.pdb1.gz) 103 Kb
  • Biological Unit Coordinates (1f0l.pdb2.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 1F0L
  • CSU: Contacts of Structural Units for 1F0L
  • Likely Quarternary Molecular Structure file(s) for 1F0L
  • Structure Factors (1411 Kb)
  • Retrieve 1F0L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F0L from S2C, [Save to disk]
  • Re-refined 1f0l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1F0L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F0L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F0L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f0la2, region A:1-187 [Jmol] [rasmolscript] [script source]
        - Domain d1f0la3, region A:201-380 [Jmol] [rasmolscript] [script source]
        - Domain d1f0la1, region A:381-535 [Jmol] [rasmolscript] [script source]
        - Domain d1f0lb2, region B:1-187 [Jmol] [rasmolscript] [script source]
        - Domain d1f0lb3, region B:201-380 [Jmol] [rasmolscript] [script source]
        - Domain d1f0lb1, region B:381-535 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f0l_A] [1f0l_B] [1f0l]
  • SWISS-PROT database: [P00588]
  • Domain organization of [DTX_CORBE] by SWISSPFAM
  • Other resources with information on 1F0L
  • Community annotation for 1F0L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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