1F0V Hydrolase Dna date May 17, 2000
title Crystal Structure Of An Rnase A Dimer Displaying A New Type Domain Swapping
authors Y.S.Liu, G.Gotte, M.Libonati, D.S.Eisenberg
compound source
Molecule: 5'-D(Cpg)-3'
Chain: M, N, O, P
Engineered: Yes
 Synthetic: Yes

Molecule: Ribonuclease A
Chain: A, B, C, D
Synonym: Rnase 1, Rnase A
Ec: 3.1.27.5
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Pancreas
symmetry Space Group: P 1 21 1
R_factor 0.184 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.569 96.341 48.240 90.00 107.50 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand GOL, PO4 enzyme Hydrolase E.C.3.1.27.5 BRENDA
related structures by homologous chain: 1C9V, 1QHC
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • ribonuclease A activity


    • Primary referenceA domain-swapped RNase A dimer with implications for amyloid formation., Liu Y, Gotte G, Libonati M, Eisenberg D, Nat Struct Biol 2001 Mar;8(3):211-4. PMID:11224563
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (1f0v.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (1f0v.pdb2.gz) 27 Kb
  • Biological Unit Coordinates (1f0v.pdb3.gz) 26 Kb
  • Biological Unit Coordinates (1f0v.pdb4.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 1F0V
  • CSU: Contacts of Structural Units for 1F0V
  • Likely Quarternary Molecular Structure file(s) for 1F0V
  • Structure Factors (641 Kb)
  • Retrieve 1F0V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F0V from S2C, [Save to disk]
  • Re-refined 1f0v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1F0V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1F0V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F0V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f0va_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1f0vb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1f0vc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1f0vd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f0v_B] [1f0v_N] [1f0v_D] [1f0v_A] [1f0v_C] [1f0v_M] [1f0v_P] [1f0v] [1f0v_O]
  • SWISS-PROT database: [P61823]
  • Domain organization of [RNAS1_BOVIN] by SWISSPFAM
  • Domain found in 1F0V: [RNAse_Pc ] by SMART
    • Other resources with information on 1F0V
  • Community annotation for 1F0V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1F0V from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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