1F1G	Oxidoreductase	date	May 18, 2000
title	Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide
authors	P.J.Hart, N.L.Ogihara, H.Liu, A.M.Nersissian, J.S.Valentine, D.Ei
compound		source
Molecule: Copper-Zinc Superoxide Dismutase Chain: A, B, C, D, E, F Synonym: Cuznsod Ec: 1.15.1.1 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Cellular_location: Cytoplasm Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector: Pet3d
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.500 72.480 72.470 109.20 109.55 109.21
method	X-Ray Diffraction	resolution	1.35 Å
ligand	CU, PO4, ZN	enzyme	Oxidoreductase E.C.1.15.1.1 BRENDA
related structures	by homologous chain: 1JCV
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	A structure-based mechanism for copper-zinc superoxide dismutase., Hart PJ, Balbirnie MM, Ogihara NL, Nersissian AM, Weiss MS, Valentine JS, Eisenberg D, Biochemistry. 1999 Feb 16;38(7):2167-78. PMID:10026301

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (318 Kb) [Save to disk] Biological Unit Coordinates (1f1g.pdb1.gz) 107 Kb Biological Unit Coordinates (1f1g.pdb2.gz) 106 Kb Biological Unit Coordinates (1f1g.pdb3.gz) 106 Kb LPC: Ligand-Protein Contacts for 1F1G CSU: Contacts of Structural Units for 1F1G Likely Quarternary Molecular Structure file(s) for 1F1G Structure Factors (2318 Kb) Retrieve 1F1G in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1F1G from S2C, [Save to disk] Re-refined 1f1g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1F1G in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1F1G

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1F1G 1F1GA 1F1GB 1F1GC 1F1GD 1F1GE 1F1GF from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1F1G, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f1ga_, region A [Jmol] [rasmolscript] [script source]     - Domain d1f1gb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1f1gc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1f1gd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1f1ge_, region E [Jmol] [rasmolscript] [script source]     - Domain d1f1gf_, region F [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1f1g_A] [1f1g_D] [1f1g_C] [1f1g_E] [1f1g] [1f1g_F] [1f1g_B] SWISS-PROT database: [P00445] Domain organization of [SODC_YEAST] by SWISSPFAM

Other resources with information on 1F1G

Community annotation for 1F1G at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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