1F1O Lyase date May 19, 2000
title Structural Studies Of Adenylosuccinate Lyases
authors E.A.Toth, T.Yeates
compound source
Molecule: Adenylosuccinate Lyase
Chain: A
Synonym: Asl
Ec: 4.3.2.2
Engineered: Yes
Organism_scientific: Bacillus Subtilis
Organism_taxid: 1423
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pt7-7
symmetry Space Group: P 65 2 2
R_factor 0.336 R_Free 0.355
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.530 129.530 282.080 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.25 Å
ligand
enzyme Lyase E.C.4.3.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of adenylosuccinate lyase from Pyrobaculum aerophilum reveals an intracellular protein with three disulfide bonds., Toth EA, Worby C, Dixon JE, Goedken ER, Marqusee S, Yeates TO, J Mol Biol 2000 Aug 11;301(2):433-50. PMID:10926519
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (1f1o.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 1F1O
  • Likely Quarternary Molecular Structure file(s) for 1F1O
  • Retrieve 1F1O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F1O from S2C, [Save to disk]
  • View 1F1O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F1O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F1O, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f1oa_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f1o_A] [1f1o]
  • SWISS-PROT database: [P12047]
  • Domain organization of [PUR8_BACSU] by SWISSPFAM
  • Domain found in 1F1O: [ADSL_C ] by SMART
  • Other resources with information on 1F1O
  • Community annotation for 1F1O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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