1F1V Oxidoreductase date May 20, 2000
title Anaerobic Substrate Complex Of Homoprotocatechuate 2,3-Dioxy From Arthrobacter Globiformis. (Complex With 3,4- Dihydroxyphenylacetate)
authors M.W.Vetting, J.D.Lipscomb, L.P.Wackett, L.Que Jr., D.H.Ohlendorf
compound source
Molecule: Homoprotocatechuate 2,3-Dioxygenase
Chain: A, B
Synonym: 3,4-Dihydroxyphenylacetate 2,3-Dioxygenase
Ec: 1.13.11.15
Engineered: Yes
Organism_scientific: Arthrobacter Globiformis
Organism_taxid: 1665
Strain: Cm-2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.166 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.420 59.300 103.200 90.00 118.39 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand DHY, MN enzyme Oxidoreductase E.C.1.13.11.15 BRENDA
related structures by homologous chain: 1F1R, 1Q0C
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystallographic comparison of manganese- and iron-dependent homoprotocatechuate 2,3-dioxygenases., Vetting MW, Wackett LP, Que L Jr, Lipscomb JD, Ohlendorf DH, J Bacteriol 2004 Apr;186(7):1945-58. PMID:15028678
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (1f1v.pdb1.gz) 215 Kb
  • LPC: Ligand-Protein Contacts for 1F1V
  • CSU: Contacts of Structural Units for 1F1V
  • Likely Quarternary Molecular Structure file(s) for 1F1V
  • Structure Factors (480 Kb)
  • Retrieve 1F1V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F1V from S2C, [Save to disk]
  • Re-refined 1f1v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1F1V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F1V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F1V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f1va2, region A:148-323 [Jmol] [rasmolscript] [script source]
        - Domain d1f1va1, region A:4-147 [Jmol] [rasmolscript] [script source]
        - Domain d1f1vb2, region B:148-323 [Jmol] [rasmolscript] [script source]
        - Domain d1f1vb1, region B:4-147 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f1v] [1f1v_A] [1f1v_B]
  • SWISS-PROT database: [Q44048]
  • Domain organization of [Q44048_ARTGO] by SWISSPFAM
  • Other resources with information on 1F1V
  • Community annotation for 1F1V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science