1F1W Transferase date May 20, 2000
title Src Sh2 Thref1trp Mutant Complexed With The Phosphopeptide S
authors M.S.Kimber, J.Nachman, A.M.Cunningham, G.D.Gish, T.Pawson, E.F.Pa
compound source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Src
Chain: A
Fragment: Src Sh2 Domain
Ec: 2.7.1.112
Engineered: Yes
Mutation: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11d

Molecule: S(Ptr)Vnvqn Phosphopeptide
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: Chemically Synthesized
symmetry Space Group: C 2 2 21
R_factor 0.195 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.714 56.804 102.779 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand PTR BindingDB enzyme Transferase E.C.2.7.1.112 BRENDA
related structures by homologous chain: 1BKL, 1BKM
Primary referenceStructural basis for specificity switching of the Src SH2 domain., Kimber MS, Nachman J, Cunningham AM, Gish GD, Pawson T, Pai EF, Mol Cell 2000 Jun;5(6):1043-9. PMID:10911998
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1f1w.pdb1.gz) 20 Kb
  • Biological Unit Coordinates (1f1w.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (1f1w.pdb3.gz) 39 Kb
  • LPC: Ligand-Protein Contacts for 1F1W
  • CSU: Contacts of Structural Units for 1F1W
  • Likely Quarternary Molecular Structure file(s) for 1F1W
  • Structure Factors (45 Kb)
  • Retrieve 1F1W in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F1W from S2C, [Save to disk]
  • Re-refined 1f1w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1F1W in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F1W
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F1W, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f1wa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f1w_B] [1f1w_A] [1f1w]
  • SWISS-PROT database: [P00523]
  • Domain organization of [SRC_CHICK] by SWISSPFAM
  • Domain found in 1F1W: [SH2 ] by SMART
  • Other resources with information on 1F1W
  • Community annotation for 1F1W at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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