1F2D	Lyase	date	May 24, 2000
title	1-Aminocyclopropane-1-Carboxylate Deaminase
authors	M.Yao, T.Ose, H.Sugimoto, A.Horiuchi, A.Nakagawa, D.Yokoi, T.Murak M.Honma, S.Wakatsuki, I.Tanaka
compound		source
Molecule: 1-Aminocyclopropane-1-Carboxylate Deaminase Chain: A, B, C, D Ec: 4.1.99.4 Engineered: Yes		Organism_scientific: Williopsis Saturnus Organism_taxid: 4906 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11d
symmetry	Space Group: C 2 2 21	R_factor 0.221 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 66.380 269.370 186.620 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	PLP, SO4	enzyme	Lyase E.C.4.1.99.4 BRENDA
related structures	by homologous chain: 1TZK
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystal structure of 1-aminocyclopropane-1-carboxylate deaminase from Hansenula saturnus., Yao M, Ose T, Sugimoto H, Horiuchi A, Nakagawa A, Wakatsuki S, Yokoi D, Murakami T, Honma M, Tanaka I, J Biol Chem 2000 Nov 3;275(44):34557-65. PMID:10938279

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (236 Kb) [Save to disk] Biological Unit Coordinates (1f2d.pdb1.gz) 113 Kb Biological Unit Coordinates (1f2d.pdb2.gz) 122 Kb LPC: Ligand-Protein Contacts for 1F2D CSU: Contacts of Structural Units for 1F2D Likely Quarternary Molecular Structure file(s) for 1F2D Retrieve 1F2D in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1F2D from S2C, [Save to disk]

View 1F2D in 3D

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Visual 3D analysis of 1F2D

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1F2D, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f2da_, region A [Jmol] [rasmolscript] [script source]     - Domain d1f2db_, region B [Jmol] [rasmolscript] [script source]     - Domain d1f2dc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1f2dd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1f2d_A] [1f2d_D] [1f2d_C] [1f2d_B] [1f2d] SWISS-PROT database: [Q7M523] Domain organization of [1A1D_WILSA] by SWISSPFAM

Other resources with information on 1F2D

Community annotation for 1F2D at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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