1F56 Plant Protein date Jun 13, 2000
title Spinach Plantacyanin
authors O.Einsle, Z.Mehrabian, R.Nalbandyan, A.Messerschmidt
compound source
Molecule: Plantacyanin
Chain: A, B, C
Organism_scientific: Spinacia Oleracea
Organism_common: Spinach
Organism_taxid: 3562
symmetry Space Group: P 21 21 21
R_factor 0.162 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.500 41.832 158.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand CU1, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B
  • electron transfer activity


  • Primary referenceCrystal structure of plantacyanin, a basic blue cupredoxin from spinach., Einsle O, Mehrabian Z, Nalbandyan R, Messerschmidt A, J Biol Inorg Chem 2000 Oct;5(5):666-72. PMID:11085657
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (1f56.pdb1.gz) 17 Kb
  • Biological Unit Coordinates (1f56.pdb2.gz) 16 Kb
  • Biological Unit Coordinates (1f56.pdb3.gz) 16 Kb
  • Biological Unit Coordinates (1f56.pdb4.gz) 47 Kb
  • Biological Unit Coordinates (1f56.pdb5.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 1F56
  • CSU: Contacts of Structural Units for 1F56
  • Likely Quarternary Molecular Structure file(s) for 1F56
  • Retrieve 1F56 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F56 from S2C, [Save to disk]
  • View 1F56 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F56
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F56, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f56a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1f56b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1f56c_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f56] [1f56_C] [1f56_A] [1f56_B]
  • SWISS-PROT database: [O82080]
  • Domain organization of [O82080_SPIOL] by SWISSPFAM
  • Other resources with information on 1F56
  • Community annotation for 1F56 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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