1F5L	Hydrolase	date	Jun 15, 2000
title	Urokinase Plasminogen Activator B-Chain-Amiloride Complex
authors	E.Zeslawska, A.Schweinitz, A.Karcher, P.Sondermann, S.Sperl, J.Sturzebecher, U.Jacob
compound		source
Molecule: Urokinase-Type Plasminogen Activator Chain: A Fragment: B Chain Ec: 3.4.21.73 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21d
symmetry	Space Group: P 21 21 21	R_factor 0.202 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.800 54.600 82.920 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	AMR, SO4 BindingDB	enzyme	Hydrolase E.C.3.4.21.73 BRENDA
related structures	by homologous chain: 1OWD, 1U6Q
Gene Ontology	Chain Function Process Component A
Primary reference	Crystals of the urokinase type plasminogen activator variant beta(c)-uPAin complex with small molecule inhibitors open the way towards structure-based drug design., Zeslawska E, Schweinitz A, Karcher A, Sondermann P, Sperl S, Sturzebecher J, Jacob U, J Mol Biol 2000 Aug 11;301(2):465-75. PMID:10926521

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (46 Kb) [Save to disk] Biological Unit Coordinates (1f5l.pdb1.gz) 41 Kb LPC: Ligand-Protein Contacts for 1F5L CSU: Contacts of Structural Units for 1F5L Likely Quarternary Molecular Structure file(s) for 1F5L Retrieve 1F5L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1F5L from S2C, [Save to disk]

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Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1F5L

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1F5L, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f5la_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1f5l] [1f5l_A] SWISS-PROT database: [P00749] Domain organization of [UROK_HUMAN] by SWISSPFAM Domain found in 1F5L: [Tryp_SPc ] by SMART

Other resources with information on 1F5L

Community annotation for 1F5L at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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