1F7N Viral Protein, Hydrolase date Jun 27, 2000
title Crystal Structures Of Feline Immunodeficiency Virus Dutp Pyrophosphatase And Its Nucleotide Complexes In Three Cryst
authors G.S.Prasad, E.A.Stura, J.H.Elder, C.D.Stout
compound source
Molecule: Pol Polyprotein
Chain: A, B
Fragment: Dutpase
Ec: 3.6.1.23
Engineered: Yes
Organism_scientific: Feline Immunodeficiency Virus
Organism_taxid: 11673
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Fiv-34tf10
symmetry Space Group: P 63
R_factor 0.216 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.130 79.130 87.210 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand MG, UMP enzyme Hydrolase E.C.3.6.1.23 BRENDA
related structures by homologous chain: 1DUT, 1F7O
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructures of feline immunodeficiency virus dUTP pyrophosphatase and its nucleotide complexes in three crystal forms., Prasad GS, Stura EA, Elder JH, Stout CD, Acta Crystallogr D Biol Crystallogr 2000 Sep;56 ( Pt 9):1100-9. PMID:10957629
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1f7n.pdb1.gz) 59 Kb
  • Biological Unit Coordinates (1f7n.pdb2.gz) 20 Kb
  • Biological Unit Coordinates (1f7n.pdb3.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 1F7N
  • CSU: Contacts of Structural Units for 1F7N
  • Likely Quarternary Molecular Structure file(s) for 1F7N
  • Retrieve 1F7N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F7N from S2C, [Save to disk]
  • View 1F7N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F7N
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1F7N, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f7na_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1f7nb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f7n_A] [1f7n] [1f7n_B]
  • SWISS-PROT database: [P16088]
  • Domain organization of [POL_FIVPE] by SWISSPFAM
  • Other resources with information on 1F7N
  • Community annotation for 1F7N at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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