1FA0 Transferase date Jul 11, 2000
title Structure Of Yeast Poly(A) Polymerase Bound To Manganate And
authors J.Bard, A.M.Zhelkovsky, S.Helmling, C.L.Moore, A.Bohm
compound source
Molecule: Poly(A)-Polymerase
Chain: A, B
Fragment: Residues 1-530
Ec: 2.7.7.19
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pjdelta10pap
symmetry Space Group: P 21 21 21
R_factor 0.233 R_Free 0.278
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.800 109.100 238.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand 3AD, 3AT, MN, POP enzyme Transferase E.C.2.7.7.19 BRENDA
note 1FA0 (Molecule of the Month:pdb106)
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of yeast poly(A) polymerase alone and in complex with 3'-dATP., Bard J, Zhelkovsky AM, Helmling S, Earnest TN, Moore CL, Bohm A, Science 2000 Aug 25;289(5483):1346-9. PMID:10958780
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (170 Kb) [Save to disk]
  • Biological Unit Coordinates (1fa0.pdb1.gz) 84 Kb
  • Biological Unit Coordinates (1fa0.pdb2.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 1FA0
  • CSU: Contacts of Structural Units for 1FA0
  • Likely Quarternary Molecular Structure file(s) for 1FA0
  • Retrieve 1FA0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FA0 from S2C, [Save to disk]
  • View 1FA0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FA0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FA0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fa0a3, region A:202-351 [Jmol] [rasmolscript] [script source]
        - Domain d1fa0a4, region A:3-201 [Jmol] [rasmolscript] [script source]
        - Domain d1fa0a1, region A:352-523 [Jmol] [rasmolscript] [script source]
        - Domain d1fa0b4, region B:2-201 [Jmol] [rasmolscript] [script source]
        - Domain d1fa0b3, region B:202-351 [Jmol] [rasmolscript] [script source]
        - Domain d1fa0b1, region B:352-530 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fa0] [1fa0_A] [1fa0_B]
  • SWISS-PROT database: [P29468]
  • Domain organization of [PAP_YEAST] by SWISSPFAM
  • Other resources with information on 1FA0
  • Community annotation for 1FA0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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