1FAD Apoptosis date Mar 23, 1999
title Death Domain Of Fas-Associated Death Domain Protein, Residue
authors E.J.Jeong, S.Bang, T.H.Lee, Y.I.Park, W.S.Sim, K.S.Kim
compound source
Molecule: Protein (Fadd Protein)
Chain: A
Fragment: Death Domain (Residues 89-183)
Engineered: Yes
Mutation: Yes
Other_details: N-Terminal Extension Of Gly-Ser-His-Met From Artifact. Coordinates Are Not Shown For Artifact.
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_cellular_location: Cytoplasm
Expression_system_plasmid: Pet15b
methodSolution NMR
related structures by homologous chain: 1E41
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe solution structure of FADD death domain. Structural basis of death domain interactions of Fas and FADD., Jeong EJ, Bang S, Lee TH, Park YI, Sim WS, Kim KS, J Biol Chem 1999 Jun 4;274(23):16337-42. PMID:10347191
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (575 Kb) [Save to disk]
  • Biological Unit Coordinates (1fad.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1FAD
  • Original NMR restraints for 1FAD from PDB
  • Retrieve 1FAD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FAD from S2C, [Save to disk]
    • View 1FAD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FAD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FAD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fada_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fad] [1fad_A]
  • SWISS-PROT database: [Q61160]
  • Domain organization of [FADD_MOUSE] by SWISSPFAM
  • Domain found in 1FAD: [DEATH ] by SMART
    • Other resources with information on 1FAD
  • Community annotation for 1FAD at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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