1FBM	Cell Adhesion	date	Jul 16, 2000
title	Assembly Domain Of Cartilage Oligomeric Matrix Protein In Co All-Trans Retinol
authors	Y.Guo, D.Bozic, V.N.Malashkevich, R.A.Kammerer, T.Schulthess
compound		source
Molecule: Protein (Cartilage Oligomeric Matrix Protein) Chain: A, B, C, D, E Fragment: Assembly Domain Synonym: Comp Engineered: Yes Other_details: Pentameric Coiled-Coil		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Tissue: Cartilage Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_plasmid: Pet-3b
symmetry	Space Group: P 1 21 1	R_factor 0.195 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 38.470 49.470 54.980 90.00 103.84 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	RTL	enzyme
related structures	by homologous chain: 1VDF
Primary reference	All-trans retinol, vitamin D and other hydrophobic compounds bind in the axial pore of the five-stranded coiled-coil domain of cartilage oligomeric matrix protein., Guo Y, Bozic D, Malashkevich VN, Kammerer RA, Schulthess T, Engel J, EMBO J 1998 Sep 15;17(18):5265-72. PMID:9736606

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk] Biological Unit Coordinates (1fbm.pdb1.gz) 42 Kb LPC: Ligand-Protein Contacts for 1FBM CSU: Contacts of Structural Units for 1FBM Likely Quarternary Molecular Structure file(s) for 1FBM Retrieve 1FBM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FBM from S2C, [Save to disk]

View 1FBM in 3D

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Visual 3D analysis of 1FBM

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FBM, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fbma_, region A [Jmol] [rasmolscript] [script source]     - Domain d1fbmb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1fbmc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1fbmd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1fbme_, region E [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fbm_C] [1fbm_B] [1fbm_E] [1fbm_D] [1fbm_A] [1fbm] SWISS-PROT database: [P35444] Domain organization of [COMP_RAT] by SWISSPFAM

Other resources with information on 1FBM

Community annotation for 1FBM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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