1FC8 Rna Dna Chimera date Jul 18, 2000
title Nmr Solution Structure Of A Chimeric Oligonucleotide Hairpin D(Ttcg)2'F-A(Gtcc)
authors J.F.Trempe, K.Gehring
compound source
Molecule: 5'-R(Gpgpapcp)D(Tptpcpgp(Gfl)P(Taf)P(C P(Cfl))-3';
Chain: A
Synonym: Rna2'F-Ana Hairpin
Engineered: Yes
 Synthetic: Yes
Other_details: Solid Phase Synthesis; Phosphoramidite Chemi
methodSolution NMR
ligand CFL, GFL, TAF enzyme
Primary referenceNMR solution structure of an oligonucleotide hairpin with a 2'F-ANA/RNA stem: implications for RNase H specificity toward DNA/RNA hybrid duplexes., Trempe JF, Wilds CJ, Denisov AY, Pon RT, Damha MJ, Gehring K, J Am Chem Soc 2001 May 30;123(21):4896-903. PMID:11457316
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (1fc8.pdb1.gz) 7 Kb
  • LPC: Ligand-Protein Contacts for 1FC8
  • CSU: Contacts of Structural Units for 1FC8
  • Original NMR restraints for 1FC8 from PDB
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  • SEQRES to COORDINATES correlation for 1FC8 from S2C, [Save to disk]
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  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FC8, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fc8_A] [1fc8]
  • SWISS-PROT database:
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