1FC9 Hydrolase date Jul 18, 2000
title Photosystem II D1 C-Terminal Processing Protease
authors D.I.Liao, J.Qian, D.A.Chisholm, D.B.Jordan, B.A.Diner
compound source
Molecule: Photosystem II D1 Protease
Chain: A
Fragment: Residues 77-464
Synonym: D1 C-Terminal Processing Protease
Engineered: Yes
Organism_scientific: Scenedesmus Obliquus
Organism_taxid: 3088
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plys
Expression_system_plasmid: Pet-32(A)-D1p(+Am)
symmetry Space Group: C 1 2 1
R_factor 0.191 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
108.600 63.100 60.700 90.00 119.80 90.00
method X-Ray Diffractionresolution 1.90 Å
related structures by homologous chain: 1FC6, 1FC7
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of the photosystem II D1 C-terminal processing protease., Liao DI, Qian J, Chisholm DA, Jordan DB, Diner BA, Nat Struct Biol 2000 Sep;7(9):749-53. PMID:10966643
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (1fc9.pdb1.gz) 62 Kb
  • CSU: Contacts of Structural Units for 1FC9
  • Likely Quarternary Molecular Structure file(s) for 1FC9
  • Retrieve 1FC9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FC9 from S2C, [Save to disk]
  • View 1FC9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FC9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FC9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fc9a3, region A:157-248 [Jmol] [rasmolscript] [script source]
        - Domain d1fc9a4, region A:78-156,A:249-463 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fc9] [1fc9_A]
  • SWISS-PROT database: [O04073]
  • Domain organization of [O04073_SCEOB] by SWISSPFAM
  • Domains found in 1FC9: [PDZ] [TSPc ] by SMART
  • Other resources with information on 1FC9
  • Community annotation for 1FC9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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