1FF1 Signaling Protein date Jul 24, 2000
title Structure Of The Second Eps15 Homology Domain Of Human Eps15 Complex With Ptgssstnpfl
authors T.De Beer, A.N.Hoofnagle, J.L.Enmon, R.C.Bowers, M.Yamabhai, B.K. M.Overduin
compound source
Molecule: Epidermal Growth Factor Receptor Substrate 15
Chain: A
Fragment: Second Eh Domain
Synonym: Eps15
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prseta

Molecule: Ptgssstnpfl Peptide
Chain: B
Engineered: Yes
Synthetic: Yes
Other_details: Chemically Synthesized Peptide
methodSolution NMR
ligand CA enzyme
related structures by homologous chain: 1F8H
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular mechanism of NPF recognition by EH domains., de Beer T, Hoofnagle AN, Enmon JL, Bowers RC, Yamabhai M, Kay BK, Overduin M, Nat Struct Biol 2000 Nov;7(11):1018-22. PMID:11062555
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (533 Kb) [Save to disk]
  • Biological Unit Coordinates (1ff1.pdb1.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 1FF1
  • CSU: Contacts of Structural Units for 1FF1
  • Original NMR restraints for 1FF1 from PDB
  • Retrieve 1FF1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FF1 from S2C, [Save to disk]
    • View 1FF1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FF1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FF1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ff1a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1l1ff1, region F:213-505 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ff1] [1ff1_A] [1ff1_B]
  • SWISS-PROT database: [P42566]
  • Domain organization of [EPS15_HUMAN] by SWISSPFAM
  • Domain found in 1FF1: [EH ] by SMART
    • Other resources with information on 1FF1
  • Community annotation for 1FF1 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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