1FGM	Oxidoreductase	date	Jul 28, 2000
title	Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
authors	D.R.Tomchick, W.Minor, T.R.Holman
compound		source
Molecule: Seed Lipoxygenase-1 Chain: A Synonym: L-1 Ec: 1.13.11.12 Engineered: Yes Mutation: Yes		Organism_scientific: Glycine Max Organism_common: Soybean Organism_taxid: 3847 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 1 21 1	R_factor 0.178 R_Free 0.212
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.260 92.770 49.230 90.00 90.22 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	FE	enzyme	Oxidoreductase E.C.1.13.11.12 BRENDA
related structures	by homologous chain: 1FGQ, 1RRH
Gene Ontology	Chain Function Process Component A
Primary reference	Structural and functional characterization of second-coordination sphere mutants of soybean lipoxygenase-1., Tomchick DR, Phan P, Cymborowski M, Minor W, Holman TR, Biochemistry 2001 Jun 26;40(25):7509-17. PMID:11412104

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk] Biological Unit Coordinates (1fgm.pdb1.gz) 144 Kb LPC: Ligand-Protein Contacts for 1FGM CSU: Contacts of Structural Units for 1FGM Likely Quarternary Molecular Structure file(s) for 1FGM Structure Factors (660 Kb) Retrieve 1FGM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FGM from S2C, [Save to disk] Re-refined 1fgm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1FGM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FGM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FGM, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fgma1, region A:150-839 [Jmol] [rasmolscript] [script source]     - Domain d1fgma2, region A:7-149 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fgm] [1fgm_A] SWISS-PROT database: [P08170] Domain organization of [LOX1_SOYBN] by SWISSPFAM Domain found in 1FGM: [LH2 ] by SMART

Other resources with information on 1FGM

Community annotation for 1FGM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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