1FGR Oxidoreductase date Jul 28, 2000
title Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
authors D.R.Tomchick, W.Minor, T.Holman
compound source
Molecule: Seed Lipoxygenase-1
Chain: A
Synonym: L-1
Ec: 1.13.11.12
Engineered: Yes
Mutation: Yes
Organism_scientific: Glycine Max
Organism_common: Soybean
Organism_taxid: 3847
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.196 R_Free 0.222
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.420 92.830 49.360 90.00 90.08 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand FE enzyme Oxidoreductase E.C.1.13.11.12 BRENDA
related structures by homologous chain: 1F8N, 1FGT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional characterization of second-coordination sphere mutants of soybean lipoxygenase-1., Tomchick DR, Phan P, Cymborowski M, Minor W, Holman TR, Biochemistry 2001 Jun 26;40(25):7509-17. PMID:11412104
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]
  • Biological Unit Coordinates (1fgr.pdb1.gz) 143 Kb
  • LPC: Ligand-Protein Contacts for 1FGR
  • CSU: Contacts of Structural Units for 1FGR
  • Likely Quarternary Molecular Structure file(s) for 1FGR
  • Structure Factors (1146 Kb)
  • Retrieve 1FGR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FGR from S2C, [Save to disk]
  • Re-refined 1fgr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FGR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FGR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FGR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fgra1, region A:150-839 [Jmol] [rasmolscript] [script source]
        - Domain d1fgra2, region A:6-149 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fgr] [1fgr_A]
  • SWISS-PROT database: [P08170]
  • Domain organization of [LOX1_SOYBN] by SWISSPFAM
  • Domain found in 1FGR: [LH2 ] by SMART
  • Other resources with information on 1FGR
  • Community annotation for 1FGR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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