1FGZ Signaling Protein date Jul 29, 2000
title Grp1 Ph Domain (Unliganded)
authors S.E.Lietzke, S.Bose, T.Cronin, J.Klarlund, A.Chawla, M.P.Czech, D.G.Lambright
compound source
Molecule: Grp1
Chain: A
Fragment: Pleckstrin Homology Domain (Residues 261 - 387)
Synonym: Arf1 Guanine Nucleotide Exchange Factor And Integrin Binding Protein Homolog;
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.223 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.700 107.600 37.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand MSE, SO4 enzyme
related structures by homologous chain: 1FHW, 1U27
Primary referenceStructural basis of 3-phosphoinositide recognition by pleckstrin homology domains., Lietzke SE, Bose S, Cronin T, Klarlund J, Chawla A, Czech MP, Lambright DG, Mol Cell 2000 Aug;6(2):385-94. PMID:10983985
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (1fgz.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 1FGZ
  • CSU: Contacts of Structural Units for 1FGZ
  • Likely Quarternary Molecular Structure file(s) for 1FGZ
  • Retrieve 1FGZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FGZ from S2C, [Save to disk]
    • View 1FGZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FGZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FGZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fgza_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fgz] [1fgz_A]
  • SWISS-PROT database: [O08967]
  • Domain organization of [CYH3_MOUSE] by SWISSPFAM
  • Domain found in 1FGZ: [PH ] by SMART
    • Other resources with information on 1FGZ
  • Community annotation for 1FGZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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