1FIE	Transferase	date	Aug 24, 1996
title	Recombinant Human Coagulation Factor Xiii
authors	V.C.Yee, D.C.Teller
compound		source
Molecule: Coagulation Factor Xiii Chain: A, B Fragment: A-Subunit (Thrombin-Cleaved) Ec: 2.3.2.13 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Placenta Expression_system: Saccharomyces Cerevisiae Expression_system_common: Baker'S Yeast Expression_system_taxid: 4932
symmetry	Space Group: P 1 21 1	R_factor 0.182 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 101.100 73.130 134.700 90.00 106.40 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand		enzyme	Transferase E.C.2.3.2.13 BRENDA
related structures	by homologous chain: 1GGU, 1QRK
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural evidence that the activation peptide is not released upon thrombin cleavage of factor XIII., Yee VC, Pedersen LC, Bishop PD, Stenkamp RE, Teller DC, Thromb Res 1995 Jun 1;78(5):389-97. PMID:7660355

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk] Biological Unit Coordinates (1fie.pdb1.gz) 237 Kb CSU: Contacts of Structural Units for 1FIE Likely Quarternary Molecular Structure file(s) for 1FIE Retrieve 1FIE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FIE from S2C, [Save to disk]

View 1FIE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FIE

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FIE, from MSDmotif at EBI Genome occurence of 1FIE's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fiea4, region A:191-515 [Jmol] [rasmolscript] [script source]     - Domain d1fiea2, region A:516-627 [Jmol] [rasmolscript] [script source]     - Domain d1fiea3, region A:628-727 [Jmol] [rasmolscript] [script source]     - Domain d1fiea1, region A:9-190 [Jmol] [rasmolscript] [script source]     - Domain d1fieb1, region B:10-190 [Jmol] [rasmolscript] [script source]     - Domain d1fieb4, region B:191-515 [Jmol] [rasmolscript] [script source]     - Domain d1fieb2, region B:516-627 [Jmol] [rasmolscript] [script source]     - Domain d1fieb3, region B:628-727 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fie_B] [1fie] [1fie_A] SWISS-PROT database: [P00488] Domain organization of [F13A_HUMAN] by SWISSPFAM Domain found in 1FIE: [TGc ] by SMART

Other resources with information on 1FIE

Community annotation for 1FIE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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