1FM6 Transcription date Aug 16, 2000
title The 2.1 Angstrom Resolution Crystal Structure Of The Heterod The Human Rxralpha And Ppargamma Ligand Binding Domains Res Bound With 9-Cis Retinoic Acid And Rosiglitazone And Co-Act Peptides.
authors R.T.Gampe Jr., V.G.Montana, M.H.Lambert, A.B.Miller, R.K.Bledsoe M.V.Milburn, S.A.Kliewer, T.M.Willson, H.E.Xu
compound source
Molecule: Retinoic Acid Receptor Rxr-Alpha
Chain: A, U
Fragment: Ligand Binding Domain - Residues 225 -462
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pacyc184

Molecule: Peroxisome Proliferator Activated Receptor Gamma
Chain: D, X
Fragment: Ligand Binding Domain - Residues 206 - 477
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset

Molecule: Steroid Receptor Coactivator
Chain: B, V, E, Y
Fragment: Src-1 Peptide
Engineered: Yes

Synthetic: Yes
Other_details: Chemically Synthesized 25mer Portion Of Huma Coactivator Peptide
symmetry Space Group: P 1 21 1
R_factor 0.250 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.255 222.364 55.289 90.00 98.59 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 9CR, BRL BindingDB enzyme
related structures by homologous chain: 1FBY, 1FM9, 1I7G, 1X76
Gene
Ontology
ChainFunctionProcessComponent
A, U


X, D


Y, E, B, V


Primary referenceAsymmetry in the PPARgamma/RXRalpha crystal structure reveals the molecular basis of heterodimerization among nuclear receptors., Gampe RT Jr, Montana VG, Lambert MH, Miller AB, Bledsoe RK, Milburn MV, Kliewer SA, Willson TM, Xu HE, Mol Cell 2000 Mar;5(3):545-55. PMID:10882139
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (1fm6.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (1fm6.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 1FM6
  • CSU: Contacts of Structural Units for 1FM6
  • Likely Quarternary Molecular Structure file(s) for 1FM6
  • Structure Factors (491 Kb)
  • Retrieve 1FM6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FM6 from S2C, [Save to disk]
  • Re-refined 1fm6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FM6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FM6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FM6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fm6a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fm6d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1fm6u_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1fm6x_, region X [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fm6_X] [1fm6_B] [1fm6_Y] [1fm6_D] [1fm6_U] [1fm6_A] [1fm6] [1fm6_V] [1fm6_E]
  • SWISS-PROT database: [Q15788] [P37231] [P19793]
  • Domain organization of [NCOA1_HUMAN] [PPARG_HUMAN] [RXRA_HUMAN] by SWISSPFAM
  • Domain found in 1FM6: [HOLI ] by SMART
  • Other resources with information on 1FM6
  • Community annotation for 1FM6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1FM6 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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