1FM9	Transcription	date	Aug 16, 2000
title	The 2.1 Angstrom Resolution Crystal Structure Of The Heterod The Human Rxralpha And Ppargamma Ligand Binding Domains Res Bound With 9-Cis Retinoic Acid And Gi262570 And Co-Activato Peptides.
authors	R.T.Gampe Jr., V.G.Montana, M.H.Lambert, A.B.Miller, R.K.Bledsoe M.V.Milburn, S.A.Kliewer, T.M.Willson, H.E.Xu
compound		source
Molecule: Retinoic Acid Receptor Rxr-Alpha Chain: A Fragment: Ligand Binding Domain - Residues 225 - 462 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Plasmid Expression_system_plasmid: Pacyc184
Molecule: Peroxisome Proliferator Activated Receptor Gamma Chain: D Fragment: Ligand Binding Domain - Residues 206 - 477 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Plasmid Expression_system_plasmid: Prset
Molecule: Steroid Receptor Coactivator Chain: B, E Fragment: Src-1 Peptide Engineered: Yes		Synthetic: Yes Other_details: Chemically Synthesized 25mer Portion Of Huma Coactivator Peptide
symmetry	Space Group: P 21 21 21	R_factor 0.239 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 46.143 54.046 211.149 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	570, 9CR BindingDB	enzyme
related structures	by homologous chain: 1FM6, 1G5Y, 1QKM
Gene Ontology	Chain Function Process Component A D E, B
Primary reference	Asymmetry in the PPARgamma/RXRalpha crystal structure reveals the molecular basis of heterodimerization among nuclear receptors., Gampe RT Jr, Montana VG, Lambert MH, Miller AB, Bledsoe RK, Milburn MV, Kliewer SA, Willson TM, Xu HE, Mol Cell 2000 Mar;5(3):545-55. PMID:10882139

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (1fm9.pdb1.gz) 87 Kb LPC: Ligand-Protein Contacts for 1FM9 CSU: Contacts of Structural Units for 1FM9 Likely Quarternary Molecular Structure file(s) for 1FM9 Structure Factors (224 Kb) Retrieve 1FM9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FM9 from S2C, [Save to disk] Re-refined 1fm9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1FM9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FM9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FM9, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fm9a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1fm9d_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fm9_A] [1fm9_B] [1fm9_E] [1fm9] [1fm9_D] SWISS-PROT database: [Q15788] [P37231] [P19793] Domain organization of [NCOA1_HUMAN] [PPARG_HUMAN] [RXRA_HUMAN] by SWISSPFAM Domain found in 1FM9: [HOLI ] by SMART

Other resources with information on 1FM9

Community annotation for 1FM9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1FM9 from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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