1FNN Cell Cycle date Aug 22, 2000
title Crystal Structure Of Cdc6p From Pyrobaculum Aerophilum
authors J.Liu, C.L.Smith, D.Deryckere, K.Deangelis, G.S.Martin, J.M.Berge
compound source
Molecule: Cell Division Control Protein 6
Chain: A, B
Synonym: Cdc6p
Engineered: Yes
 Organism_scientific: Pyrobaculum Aerophilum
Organism_taxid: 13773
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Plasmid Pet28b
symmetry Space Group: P 31
R_factor 0.221 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.070 132.070 82.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand ADP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control., Liu J, Smith CL, DeRyckere D, DeAngelis K, Martin GS, Berger JM, Mol Cell 2000 Sep;6(3):637-48. PMID:11030343
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (1fnn.pdb1.gz) 65 Kb
  • Biological Unit Coordinates (1fnn.pdb2.gz) 66 Kb
  • LPC: Ligand-Protein Contacts for 1FNN
  • CSU: Contacts of Structural Units for 1FNN
  • Likely Quarternary Molecular Structure file(s) for 1FNN
  • Structure Factors (765 Kb)
  • Retrieve 1FNN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FNN from S2C, [Save to disk]
  • Re-refined 1fnn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1FNN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FNN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FNN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fnna2, region A:1-276 [Jmol] [rasmolscript] [script source]
        - Domain d1fnna1, region A:277-388 [Jmol] [rasmolscript] [script source]
        - Domain d1fnnb2, region B:1-276 [Jmol] [rasmolscript] [script source]
        - Domain d1fnnb1, region B:277-388 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fnn_B] [1fnn] [1fnn_A]
  • SWISS-PROT database: [Q8ZYK1]
  • Domain organization of [Q8ZYK1_PYRAE] by SWISSPFAM
  • Domains found in 1FNN: [AAA] [Cdc6_C ] by SMART
    • Other resources with information on 1FNN
  • Community annotation for 1FNN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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