1FOQ Rna date Aug 28, 2000
title Pentameric Model Of The Bacteriophage Phi29 Prohead Rna
authors A.A.Simpson, Y.Tao, P.G.Leiman, M.O.Badasso, Y.He, P.J.Jardine, N. M.C.Morais, S.Grimes, D.L.Anderson, T.S.Baker, M.G.Rossmann
compound source
Molecule: Bacteriophage Phi29 Prohead Rna
Chain: A, B, C, D, E
Fragment: 1-120 Base Fragment
Mutation: Yes
Organism_scientific: Bacillus Phage Phi29
Organism_taxid: 10756
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 20.00 Å
Primary referenceStructure of the bacteriophage phi29 DNA packaging motor., Simpson AA, Tao Y, Leiman PG, Badasso MO, He Y, Jardine PJ, Olson NH, Morais MC, Grimes S, Anderson DL, Baker TS, Rossmann MG, Nature 2000 Dec 7;408(6813):745-50. PMID:11130079
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk]
  • Biological Unit Coordinates (1foq.pdb1.gz) 198 Kb
  • CSU: Contacts of Structural Units for 1FOQ
  • Likely Quarternary Molecular Structure file(s) for 1FOQ
  • Retrieve 1FOQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FOQ from S2C, [Save to disk]
  • View 1FOQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FOQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FOQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1foq_A] [1foq] [1foq_E] [1foq_D] [1foq_C] [1foq_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1FOQ
  • Community annotation for 1FOQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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