1FP9 Transferase date Aug 31, 2000
title Structure Of Amylomaltase From Thermus Thermophilus Hb8 In S C2
authors J.C.M.Uitdehaag, G.J.Euverink, B.A.Van Der Veen, M.Van Der Maar B.W.Dijkstra
compound source
Molecule: 4-Alpha-Glucanotransferase
Chain: A
Synonym: Amylomaltase
Ec: 2.4.1.25
Engineered: Yes
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: C 1 2 1
R_factor 0.239 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.913 52.445 104.908 90.00 96.42 90.00
method X-Ray Diffractionresolution 3.10 Å
ligand
enzyme Transferase E.C.2.4.1.25 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • 4-alpha-glucanotransferase a...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (1fp9.pdb1.gz) 81 Kb
  • CSU: Contacts of Structural Units for 1FP9
  • Likely Quarternary Molecular Structure file(s) for 1FP9
  • Structure Factors (76 Kb)
  • Retrieve 1FP9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FP9 from S2C, [Save to disk]
  • Re-refined 1fp9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FP9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FP9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FP9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fp9a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fp9_A] [1fp9]
  • SWISS-PROT database: [O87172]
  • Domain organization of [MALQ_THETH] by SWISSPFAM
  • Other resources with information on 1FP9
  • Community annotation for 1FP9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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