1FR8 Transferase date Sep 07, 2000
title Crystal Structure Of The Bovine Beta 1,4 Galactosyltransfera (B4galt1) Catalytic Domain Complexed With Uridine Diphospho
authors L.N.Gastinel, C.Cambillau, Y.Bourne
compound source
Molecule: Beta 1,4 Galactosyltransferase
Chain: A, B
Fragment: Catalytic Domain
Synonym: Beta4galt1
Ec: 2.4.1.38
Engineered: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Liver
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_cell_line: Nso
Expression_system_plasmid: Pee12
symmetry Space Group: C 2 2 21
R_factor 0.237 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.720 161.370 106.310 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand GDU enzyme Transferase E.C.2.4.1.38 BRENDA
related structures by homologous chain: 1FGX, 1NHE
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of the bovine beta4galactosyltransferase catalytic domain and its complex with uridine diphosphogalactose., Gastinel LN, Cambillau C, Bourne Y, EMBO J 1999 Jul 1;18(13):3546-57. PMID:10393171
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (1fr8.pdb1.gz) 91 Kb
  • LPC: Ligand-Protein Contacts for 1FR8
  • CSU: Contacts of Structural Units for 1FR8
  • Likely Quarternary Molecular Structure file(s) for 1FR8
  • Structure Factors (418 Kb)
  • Retrieve 1FR8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FR8 from S2C, [Save to disk]
  • Re-refined 1fr8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1FR8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FR8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FR8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fr8a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fr8b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fr8] [1fr8_B] [1fr8_A]
  • SWISS-PROT database: [P08037]
  • Domain organization of [B4GT1_BOVIN] by SWISSPFAM
  • Other resources with information on 1FR8
  • Community annotation for 1FR8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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